8,072 tools
seqcraft_plan_domestication
Scan a sequence for internal Type IIS or standard restriction sites and return revision-bound synonymous mutation candidates to eliminate in…
seqcraft_stage_domestication_candidate
Stage an exact synonymous mutation candidate returned by seqcraft_domesticate_sequence. Checks revision locking to ensure the molecule was n…
seqcraft_stage_sequence_transaction
Stage an exact synonymous mutation candidate returned by seqcraft_domesticate_sequence. Checks revision locking to ensure the molecule was n…
seqcraft_prepare_restriction_clone
Simulate restriction cloning between an insert construct and a destination vector using compatible restriction enzyme sticky ends.
seqcraft_compare_documents
Perform pairwise biological sequence comparison and alignment between two documents in the workspace. Returns identity percentage, nucleotid…
seqcraft_find_orfs
Search for open reading frames across all six reading frames using NCBI genetic code table 1 and a configurable minimum codon count.
seqcraft_find_crispr_targets
Scan sequence for CRISPR-Cas guide RNA target sites and protospacers across multiple Cas effectors (SpCas9, SaCas9, Cas12a/Cpf1, Cas12e/CasX…
seqcraft_screen_biosecurity
Run automated biosecurity reference pre-screening against diagnostic signature motifs of regulated Select Agents and Controlled Biological T…
seqcraft_copy_region_between_documents
Extract a nucleotide region [sourceStart1, sourceEnd1] from a source construct and stage its insertion into a target construct at targetPosi…
seqcraft_create_document_from_region
Extract a nucleotide sub-region [start1, end1] from a construct and create a new independent construct in the workspace.
seqcraft_get_history
Retrieve the change history log and undo/redo availability for the active or specified construct.
seqcraft_undo
Undo the most recent sequence edit on the active or specified construct in SeqCraft history.
seqcraft_redo
Redo the previously undone sequence edit on the active or specified construct in SeqCraft history.
seqcraft_restore_revision
Stage restoration of a document to a historical snapshot in the undo stack. Stages a revision-locked transaction.
seqcraft_import_sequence_text
Import DNA/RNA sequence data into SeqCraft from FASTA, GenBank flat file, or raw sequence text. Creates and opens the construct(s) in the wo…
seqcraft_export_document
Export the active or specified construct to standard bioinformatic formats: GenBank flat file (including all features and annotations), FAST…
seqcraft_export_sequence
Export the active or specified construct to standard bioinformatic formats: GenBank flat file (including all features and annotations), FAST…
seqcraft_search_sequence_database
Search public biological sequence databases (NCBI Nucleotide / GenBank, RefSeq, ENA / EMBL-EBI, Addgene) for accession IDs, plasmid construc…
seqcraft_import_from_database
Fetch and import an authoritative biological sequence from a public repository (NCBI Nucleotide / GenBank, RefSeq, ENA, Addgene) by accessio…
seqcraft_generate_opentrons_protocol
Compile a production-ready Python protocol for automated liquid handling on Opentrons OT-2 or Flex robots. Supports PCR master mix distribut…
seqcraft_execute_actions
Execute a batch of SeqCraft tool actions in sequential order. Rejects recursion. If any action stages a sequence mutation (status: awaiting_…
create
Create a game; omitted fields are generated compatibly by the engine.
observe
Read the currently loaded session's full observation and standing decision.
inspect
Read revision-bound attempts for here or an adjacent square using only perceived knowledge.
lookup
Look up a name in the pinned game encyclopedia.
navigation
Read perceived frontiers and known downward stairs under the knownWalking policy.
route
Find a shortest known walking route in the perceived current level.
resume
Resume a persisted game with its pinned engine and standing decision.
suspend
Release the loaded engine, preserving the game and standing decision for resume.
run
Run using one native movement command.
wait
Request one waiting turn.
climb
Attempt stairs or another engine-supported vertical transition.
search
Request a bounded native counted search (default one).
rest
Request a bounded native counted rest (default one).
kick
Attempt to kick in an adjacent compass direction.
open
Attempt to open in an adjacent compass direction.
close
Attempt to close in an adjacent compass direction.
throw
Throw one selected carried object using the engine throw command.
offer
Offer a selected carried item or perceived floor corpse at the current altar.
pickup
Pick up a perceived object underfoot, not a distant object or a carried item.